2022
Cannataro, V. L., Kudalkar, S., Dasari, K., Gaffney, S. G., Lazowski, H. M., Jackson, L. K., Yildiz, I., Das, R. K., Gould Rothberg, B. E., Anderson, K. S., & Townsend, J. P. ,
APOBEC mutagenesis and selection for NFE2L2 contribute to the origin of lung squamous-cell carcinoma ,
Lung Cancer 2022, 171 34–41
2021
Fisk, J. N., Mahal, A. R., Dornburg, A., Gaffney, S. G., Aneja, S., Contessa, J. N., Yu, J. B., & Townsend, J. P. ,
Premetastatic shifts of endogenous and exogenous mutational processes support consolidative therapy in EGFR-driven lung adenocarcinoma ,
Cancer Letters 2021,
Gaffney, S. G., Smaga, S., Schepartz, A., & Townsend, J. P. ,
Chemsearch: collaborative compound libraries with structure-aware browsing ,
Bioinformatics Advances 2021, 1 1 vbab008
Claus, E. B., Cannataro, V. L., Gaffney, S. G., & Townsend, J. P. ,
Environmental and sex-specific molecular signatures of glioma causation ,
Neuro-Oncology 2021,
2020
Villabona-Arenas, C. J., Hall, M., Lythgoe, K. A., Gaffney, S. G., Regoes, R. R., Hué, S., & Atkins, K. E. ,
Number of HIV-1 founder variants is determined by the recency of the source partner infection ,
Science 2020, 369 6499 103–108
Lu, L., Gaffney, S. G., Cannataro, V. L., & Townsend, J. ,
Transfer RNA methyltransferase gene NSUN2 mRNA expression modifies the effect of T cell activation score on patient survival in head and neck squamous carcinoma ,
Oral Oncology 2020, 101 104554
Somarelli, J. A., Gardner, H., Cannataro, V. L., Gunady, E. F., Boddy, A. M., Johnson, N. A., Fisk, J. F., Gaffney, S. G., Chuang, J. H., Li, S., Ciccarelli, F. D., Panchenko, A. R., Megquier, K., Kumar, S., Dornburg, A., DeGregori, J., Townsend, J. P. ,
Molecular Biology and Evolution of Cancer: From Discovery to Action ,
Molecular Biology and Evolution 2020, 37 2 320–326
2019
Gaffney, S. G., Ad, O., Smaga, S., Schepartz, A., & Townsend, J. P. ,
GEM-NET: Lessons in Multi-Institution Teamwork Using Collaboration Software ,
ACS Central Science 2019, 5 7 1159–1169
Gaffney, S. G., Perry, E. B., Chen, P.-M., Greenstein, A., Kaech, S. M., & Townsend, J. P. ,
The landscape of novel and complementary targets for immunotherapy: an analysis of gene expression in the tumor microenvironment ,
Oncotarget 2019, 10 44 4532-4545
Lee, J. W., Parameswaran, J., Sandoval-Schaefer, T., Eoh, K. J., Yang, D.-H., Zhu, F., Mehra, R., Sharma, R., Gaffney, S. G., … Burtness, B. A. ,
Combined Aurora kinase A (AURKA) and WEE1 inhibition demonstrates synergistic antitumor effect in squamous cell carcinoma of the head and neck ,
Clinical Cancer Research 2019, 25 11 3430-3442
Cannataro, V. L., Gaffney, S. G., Sasaki, T., Issaeva, N., Grewal, N. K. S., Grandis, J. R., … Townsend, J. P. ,
APOBEC-induced mutations and their cancer effect size in head and neck squamous cell carcinoma ,
Oncogene 2019, 38 18 3475-3487
2018
Chen, W. S., Bindra, R. S., Mo, A., Hayman, T., Husain, Z., Contessa, J. N., Gaffney, S. G., Townsend, J. P., Yu, J. B. ,
CDKN2A copy number loss is an independent prognostic factor in HPV-negative head and neck squamous cell carcinoma ,
Frontiers in Oncology 2018, 8 95
Cannataro, V. L., Gaffney, S. G., Stender, C., Zhao, Z.-M., Philips, M., Greenstein, A. E., & Townsend, J. P. ,
Heterogeneity and mutation in KRAS and associated oncogenes: evaluating the potential for the evolution of resistance to targeting of KRAS G12C ,
Oncogene 2018, 37 18 2444–2455
2017
Skrip, L. A., Fallah, M. P., Gaffney, S. G., Yaari, R., Yamin, D., Huppert, A., … Galvani, A. P. ,
Characterizing risk of Ebola transmission based on frequency and type of case–contact exposures ,
Philosophical Transactions of the Royal Society B: Biological Sciences 2017, 37 1721 20160301
Choi, M., Kadara, H., Zhang, J., Parra, E. R., Rodriguez-Canales, J., Gaffney, S. G., … Wistuba, I. I. ,
Mutation profiles in early-stage lung squamous cell carcinoma with clinical follow-up and correlation with markers of immune function ,
Annals of Oncology 2017, 28 1 83–89
Kadara, H., Choi, M., Zhang, J., Parra, E. R., Rodriguez-Canales, J., Gaffney, S. G., … Herbst, R. S. ,
Whole-exome sequencing and immune profiling of early-stage lung adenocarcinoma with fully annotated clinical follow-up ,
Annals of Oncology 2017, 28 1 75–82
2016
Zhao, Z.-M., Zhao, B., Bai, Y., Iamarino, A., Gaffney, S. G., Schlessinger, J., … Townsend, J. P. ,
Early and multiple origins of metastatic lineages within primary tumors ,
Proceedings of the National Academy of Sciences 2016, 113 8 2140–2145
2015
Wells, C., Yamin, D., Ndeffo-Mbah, M. L., Wenzel, N., Gaffney, S. G., Townsend, J. P., … Galvani, A. P. ,
Harnessing Case Isolation and Ring Vaccination to Control Ebola ,
PLoS Neglected Tropical Diseases 2015, 9 5 e0003794
2013
